Transcript: ENSMUST00000124921.2 Sfxn4-202

Description

sideroflexin 4 [Source:MGI Symbol;Acc:MGI:2137680]

Location

Chromosome 19: 60,827,196-60,849,862 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 1 domain and feature, is associated with 1838 variant alleles and maps to 185 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000063698.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000135808.8	Sfxn4-203	1309	313aa	ENSMUSP00000118743.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29943	Q925N1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000080806.10	Sfxn4-201	2923	110aa	ENSMUSP00000079621.4	Nonsense mediated decay		F8WI63	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000124921.2	Sfxn4-202	1218	115aa	ENSMUSP00000118708.2	Nonsense mediated decay		D6RHK7	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 13, Coding exons: 7, Transcript length: 1,218 bps, Translation length: 115 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000124921.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000124921.2 Sfxn4-202

Summary

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Transcript: ENSMUST00000124921.2 Sfxn4-202

Summary

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