Transcript: ENSMUST00000123927.9 1190005I06Rik-201

Description

RIKEN cDNA 1190005I06 gene [Source:MGI Symbol;Acc:MGI:1916168]

Location

Chromosome 8: 121,335,341-121,361,231 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 2031 variant alleles and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000043687.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000123927.9	1190005I06Rik-201	844	111aa	ENSMUSP00000119467.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52690	Q8K1L6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000180677.2	1190005I06Rik-203	533	76aa	ENSMUSP00000137752.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A6Q6RNR6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000144417.2	1190005I06Rik-202	508	51aa	ENSMUSP00000121882.2	Nonsense mediated decay		D6RIP9	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 844 bps, Translation length: 111 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8K1L6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS52690

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000123927.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000123927.9 1190005I06Rik-201

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Transcript: ENSMUST00000123927.9 1190005I06Rik-201

Summary

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