Transcript: ENSMUST00000123526.2 Sit1-202

Description

suppression inducing transmembrane adaptor 1 [Source:MGI Symbol;Acc:MGI:1889342]

Gene Synonyms

Sit

Location

Chromosome 4: 43,482,187-43,483,222 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 772 variant alleles and maps to 149 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000028460.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000030180.7	Sit1-201	1228	180aa	ENSMUSP00000030180.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18096	Q8C503	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000123526.2	Sit1-202	820	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 820 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000123526.2

Type

Protein coding CDS not defined

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000123526.2 Sit1-202

Summary

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Transcript: ENSMUST00000123526.2 Sit1-202

Summary

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