Transcript: ENSMUST00000118413.3 Sh2d7-202

Description

SH2 domain containing 7 [Source:MGI Symbol;Acc:MGI:2441692]

Gene Synonyms

4933412E14Rik

Location

Chromosome 9: 54,441,430-54,452,304 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 17 domains and features, is associated with 1144 variant alleles and maps to 101 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000046460.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000118413.3	Sh2d7-202	3045	458aa	ENSMUSP00000113298.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8BI17	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000060242.12	Sh2d7-201	2759	284aa	ENSMUSP00000053690.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23190	Q8BI17-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000238614.2	Sh2d7-203	1316	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,045 bps, Translation length: 458 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BI17

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000118413.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000118413.3 Sh2d7-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000118413.3 Sh2d7-202

Summary

About Us

Get help

Our sister sites

Follow us