Transcript: ENSMUST00000117346.2 Best1-201

Description

bestrophin 1 [Source:MGI Symbol;Acc:MGI:1346332]

Gene Synonyms

Vmd2, best macular dystrophy, mBest1

Location

Chromosome 19: 9,962,538-9,978,997 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 10 domains and features, is associated with 1588 variant alleles and maps to 190 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000037418.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000117346.2	Best1-201	2080	551aa	ENSMUSP00000113053.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29568	O88870	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000235983.2	Best1-203	1725	420aa	ENSMUSP00000157419.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B8Z9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000144273.2	Best1-202	301	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,080 bps, Translation length: 551 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O88870

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29568

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000117346.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000117346.2 Best1-201

Summary

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Transcript: ENSMUST00000117346.2 Best1-201

Summary

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