Transcript: ENSMUST00000115995.4 Fads3-201

Description

fatty acid desaturase 3 [Source:MGI Symbol;Acc:MGI:1928740]

Location

Chromosome 19: 10,018,933-10,037,474 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 16 domains and features, is associated with 1231 variant alleles and maps to 327 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024664.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000115995.4	Fads3-201	3687	449aa	ENSMUSP00000111659.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29570	Q3T9H9 Q9JJE7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237672.2	Fads3-205	1152	383aa	ENSMUSP00000158307.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BB03	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000237226.2	Fads3-204	411	74aa	ENSMUSP00000158123.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAJ8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000235185.2	Fads3-202	515	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000235562.2	Fads3-203	1830	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,687 bps, Translation length: 449 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JJE7

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29570

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000115995.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000115995.4 Fads3-201

Summary

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Transcript: ENSMUST00000115995.4 Fads3-201

Summary

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