Transcript: ENSMUST00000115447.2 Pttg1ip2-201

Description

PTTG1IP family member 2 [Source:MGI Symbol;Acc:MGI:2686532]

Gene Synonyms

1700015F17Rik, LOC381716

Location

Chromosome 5: 5,487,827-5,529,143 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 6 domains and features, is associated with 2514 variant alleles and maps to 107 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000079666.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000115447.2	Pttg1ip2-201	710	150aa	ENSMUSP00000111107.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51410	D3YUK8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000128151.8	Pttg1ip2-202	291	56aa	ENSMUSP00000121859.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6RPA1	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000156282.2	Pttg1ip2-203	1050	62aa	ENSMUSP00000122651.2	Nonsense mediated decay		D6RFV2	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 710 bps, Translation length: 150 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: D3YUK8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS51410

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000115447.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000115447.2 Pttg1ip2-201

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Transcript: ENSMUST00000115447.2 Pttg1ip2-201

Summary

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