Transcript: ENSMUST00000114865.8 Grik4-202

Description

glutamate receptor, ionotropic, kainate 4 [Source:MGI Symbol;Acc:MGI:95817]

Gene Synonyms

6330551K01Rik, GluRgamma1, KA-1, KA1

Location

Chromosome 9: 42,429,431-42,855,789 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 29 domains and features, is associated with 22706 variant alleles and maps to 243 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000032017.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000114865.8	Grik4-202	5887	956aa	ENSMUSP00000110515.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23089	Q8BMF5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000034515.7	Grik4-201	3413	956aa	ENSMUSP00000034515.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23089	Q8BMF5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 21, Coding exons: 19, Transcript length: 5,887 bps, Translation length: 956 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BMF5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS23089

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000114865.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000114865.8 Grik4-202

Summary

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Transcript: ENSMUST00000114865.8 Grik4-202

Summary

About Us

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