Transcript: ENSMUST00000110083.8 Sptlc3-202

Description

serine palmitoyltransferase, long chain base subunit 3 [Source:MGI Symbol;Acc:MGI:2444678]

Gene Synonyms

C130053K05Rik

Location

Chromosome 2: 139,335,833-139,478,976 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 13 domains and features, is associated with 6585 variant alleles and maps to 185 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039092.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000047370.3	Sptlc3-201	2759	563aa	ENSMUSP00000048313.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16800	Q8BG54	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000110083.8	Sptlc3-202	2227	563aa	ENSMUSP00000105710.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16800	Q8BG54	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,227 bps, Translation length: 563 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BG54

CCDS

This transcript is a member of the Mouse CCDS set: CCDS16800

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000110083.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000110083.8 Sptlc3-202

Summary

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Transcript: ENSMUST00000110083.8 Sptlc3-202

Summary

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