Transcript: ENSMUST00000108383.2 Sdr16c6-202

Description

short chain dehydrogenase/reductase family 16C, member 6 [Source:MGI Symbol;Acc:MGI:2685269]

Gene Synonyms

4833413O15Rik

Location

Chromosome 4: 4,055,931-4,077,522 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 15 domains and features, is associated with 1220 variant alleles and maps to 128 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000071019.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000108383.2	Sdr16c6-202	1923	316aa	ENSMUSP00000104020.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38688	Q05A13	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000095151.12	Sdr16c6-201	1834	316aa	ENSMUSP00000092773.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38688	Q05A13	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,923 bps, Translation length: 316 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q05A13

CCDS

This transcript is a member of the Mouse CCDS set: CCDS38688

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000108383.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000108383.2 Sdr16c6-202

Summary

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Transcript: ENSMUST00000108383.2 Sdr16c6-202

Summary

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