Transcript: ENSMUST00000107547.2 Shoc1-201

Description

shortage in chiasmata 1 [Source:MGI Symbol;Acc:MGI:2140313]

Gene Synonyms

AI481877, Gm426, LOC242489, Mzip2

Location

Chromosome 4: 59,043,753-59,138,983 reverse strand.

About this transcript

This transcript has 28 exons, is annotated with 12 domains and features, is associated with 5683 variant alleles and maps to 232 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038598.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000107547.2	Shoc1-201	4664	1481aa	ENSMUSP00000103171.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2ALV5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000122832.2	Shoc1-202	2338	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 28, Coding exons: 27, Transcript length: 4,664 bps, Translation length: 1,481 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A2ALV5

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000107547.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000107547.2 Shoc1-201

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Transcript: ENSMUST00000107547.2 Shoc1-201

Summary

About Us

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