Transcript: ENSMUST00000103580.4 Trav8d-1-201

Description

T cell receptor alpha variable 8D-1 [Source:MGI Symbol;Acc:MGI:3650121]

Location

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 782 variant alleles and maps to 45 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000103580.4	Trav8d-1-201	400	112aa	ENSMUSP00000100357.3	Variable chain T cell receptor gene that undergoes somatic recombination before transcriptionTR V gene		Q5R1H8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 400 bps, Translation length: 112 residues

Transcript Support Level (TSL)

TSL:NA

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSMUST00000103580.4

Type

TR V gene

Annotation Method

Immunoglobulin (Ig) and T-cell receptor (TcR) annotation imported from the manually curated IG gene set from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.