Transcript: ENSMUST00000100162.5 Copz1-201

Description

coatomer protein complex, subunit zeta 1 [Source:MGI Symbol;Acc:MGI:1929063]

Gene Synonyms

5930435A22Rik, D4Ertd360e, nonclathrin coat protein zeta1-COP

Location

Chromosome 15: 103,181,337-103,208,295 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 28 domains and features, is associated with 1663 variant alleles and maps to 204 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000060992.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000100162.5	Copz1-201	1676	177aa	ENSMUSP00000097738.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27901	P61924 Q542M2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230893.2	Copz1-204	2438	163aa	ENSMUSP00000155674.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8R3M1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000229549.2	Copz1-202	874	84aa	ENSMUSP00000154922.2	Nonsense mediated decay		A0A2R8VJV3	-
ENSMUST00000230417.2	Copz1-203	1298	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,676 bps, Translation length: 177 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P61924

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27901

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000100162.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000100162.5 Copz1-201

Summary

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Transcript: ENSMUST00000100162.5 Copz1-201

Summary

About Us

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