Transcript: ENSMUST00000095208.4 Capn13-201

Description

calpain 13 [Source:MGI Symbol;Acc:MGI:2685789]

Gene Synonyms

LOC381122

Location

About this transcript

This transcript has 23 exons, is annotated with 24 domains and features, is associated with 5042 variant alleles and maps to 230 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000095208.4	Capn13-201	2614	665aa	ENSMUSP00000092832.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37690	Q3UW68	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233432.2	Capn13-202	1351	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 23, Coding exons: 21, Transcript length: 2,614 bps, Translation length: 665 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3UW68

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37690

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000095208.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.