Transcript: ENSMUST00000088955.12 Bpifb6-201

Description

BPI fold containing family B, member 6 [Source:MGI Symbol;Acc:MGI:2684965]

Gene Synonyms

Bpil3, LOC228796

Location

Chromosome 2: 153,742,308-153,754,715 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 12 domains and features, is associated with 1223 variant alleles and maps to 279 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000068009.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000088955.12	Bpifb6-201	1669	449aa	ENSMUSP00000086347.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16920	Q8BU51	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000135501.3	Bpifb6-202	870	279aa	ENSMUSP00000119046.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PWW6	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 17, Coding exons: 15, Transcript length: 1,669 bps, Translation length: 449 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BU51

CCDS

This transcript is a member of the Mouse CCDS set: CCDS16920

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000088955.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000088955.12 Bpifb6-201

Summary

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Transcript: ENSMUST00000088955.12 Bpifb6-201

Summary

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