Transcript: ENSMUST00000088463.2 Defb41-201

Description

defensin beta 41 [Source:MGI Symbol;Acc:MGI:1924923]

Gene Synonyms

9230102D03Rik, Gm15386

Location

Chromosome 1: 18,321,204-18,335,362 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 1389 variant alleles and maps to 117 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000067773.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000097817.4	Defb41-202	198	65aa	ENSMUSP00000095426.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35521	Q30KP6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000088463.2	Defb41-201	467	62aa	ENSMUSP00000085811.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48226	Q30KP6-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 467 bps, Translation length: 62 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q30KP6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS48226

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000088463.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000088463.2 Defb41-201

Summary

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Transcript: ENSMUST00000088463.2 Defb41-201

Summary

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