Transcript: ENSMUST00000082254.8 Jakmip2-201

Description

janus kinase and microtubule interacting protein 2 [Source:MGI Symbol;Acc:MGI:1923467]

Gene Synonyms

6430702L21Rik, D930046L20Rik

Location

Chromosome 18: 43,664,472-43,820,838 reverse strand.

About this transcript

This transcript has 22 exons, is annotated with 23 domains and features, is associated with 9062 variant alleles and maps to 265 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024502.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000082254.8	Jakmip2-201	3512	820aa	ENSMUSP00000080881.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50271	D3YXK0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000238185.2	Jakmip2-206	498	36aa	ENSMUSP00000158094.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAH8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000237288.2	Jakmip2-204	704	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000237393.2	Jakmip2-205	4227	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235168.2	Jakmip2-202	3964	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237069.2	Jakmip2-203	483	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 22, Coding exons: 20, Transcript length: 3,512 bps, Translation length: 820 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50271

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000082254.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000082254.8 Jakmip2-201

Summary

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Transcript: ENSMUST00000082254.8 Jakmip2-201

Summary

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