Transcript: ENSMUST00000078508.7 Sp7-201

Description

Sp7 transcription factor 7 [Source:MGI Symbol;Acc:MGI:2153568]

Gene Synonyms

6430578P22Rik, Osx, osterix

Location

Chromosome 15: 102,265,041-102,274,948 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 27 domains and features, is associated with 857 variant alleles and maps to 121 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000060284.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000078508.7	Sp7-201	3097	428aa	ENSMUSP00000077596.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37228	Q2KHK9 Q8VI67	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000229464.2	Sp7-202	2873	410aa	ENSMUSP00000154859.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5RM08	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000231100.2	Sp7-203	117	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 3,097 bps, Translation length: 428 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8VI67

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37228

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000078508.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000078508.7 Sp7-201

Summary

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Transcript: ENSMUST00000078508.7 Sp7-201

Summary

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