Transcript: ENSMUST00000077889.8 Spata45-201

Description

spermatogenesis associated 45 [Source:MGI Symbol;Acc:MGI:1922808]

Gene Synonyms

1700022P22Rik

Location

Chromosome 1: 190,769,016-190,775,139 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 2 domains and features, is associated with 981 variant alleles and maps to 82 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000057072.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000192151.6	Spata45-202	443	97aa	ENSMUSP00000141721.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48483	Q9CVW4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000077889.8	Spata45-201	432	97aa	ENSMUSP00000077049.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48483	Q9CVW4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 432 bps, Translation length: 97 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CVW4

CCDS

This transcript is a member of the Mouse CCDS set: CCDS48483

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000077889.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000077889.8 Spata45-201

Summary

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Transcript: ENSMUST00000077889.8 Spata45-201

Summary

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