Transcript: ENSMUST00000071972.11 Cfap57-201

Description

cilia and flagella associated protein 57 [Source:MGI Symbol;Acc:MGI:2686209]

Gene Synonyms

1110020C03Rik, C130004B06Rik, LOC384050, Wdr65

Location

Chromosome 4: 118,411,748-118,477,974 reverse strand.

About this transcript

This transcript has 23 exons, is annotated with 31 domains and features, is associated with 4231 variant alleles and maps to 287 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000028730.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000071972.11	Cfap57-201	4020	1249aa	ENSMUSP00000071863.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51286	Q9D180	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000081921.7	Cfap57-202	3750	1249aa	ENSMUSP00000080592.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51286	Q9D180	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 23, Coding exons: 22, Transcript length: 4,020 bps, Translation length: 1,249 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D180

CCDS

This transcript is a member of the Mouse CCDS set: CCDS51286

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000071972.11

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000071972.11 Cfap57-201

Summary

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Transcript: ENSMUST00000071972.11 Cfap57-201

Summary

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