Transcript: ENSMUST00000071215.5 Chchd1-201

Description

coiled-coil-helix-coiled-coil-helix domain containing 1 [Source:MGI Symbol;Acc:MGI:1913371]

Gene Synonyms

1110001O19Rik, 2400010G13Rik

Location

Chromosome 14: 20,753,074-20,754,493 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 7 domains and features, is associated with 579 variant alleles and maps to 139 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000063787.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000071215.5	Chchd1-201	616	118aa	ENSMUSP00000071202.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26852	Q9CQA6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000224633.2	Chchd1-203	557	70aa	ENSMUSP00000152969.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q05BF0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000226072.2	Chchd1-205	578	55aa	ENSMUSP00000153514.2	Nonsense mediated decay		A0A286YDP8	-
ENSMUST00000224132.2	Chchd1-202	419	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000225527.2	Chchd1-204	388	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 616 bps, Translation length: 118 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CQA6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26852

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000071215.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000071215.5 Chchd1-201

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Transcript: ENSMUST00000071215.5 Chchd1-201

Summary

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