Transcript: ENSMUST00000071077.14 Spata18-202

Description

spermatogenesis associated 18 [Source:MGI Symbol;Acc:MGI:1920722]

Gene Synonyms

1700067I02Rik

Location

Chromosome 5: 73,808,722-73,836,855 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 16 domains and features, is associated with 2015 variant alleles and maps to 204 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000029155.18 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000071077.14	Spata18-202	1978	537aa	ENSMUSP00000064308.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57351	Q0P557	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000178631.6	Spata18-203	1437	435aa	ENSMUSP00000137444.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QPR5	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000041422.15	Spata18-201	1666	487aa	ENSMUSP00000040922.10	Non stop decay		E9QAP8	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,978 bps, Translation length: 537 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q0P557

CCDS

This transcript is a member of the Mouse CCDS set: CCDS57351

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000071077.14

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000071077.14 Spata18-202

Summary

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Transcript: ENSMUST00000071077.14 Spata18-202

Summary

About Us

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