Transcript: ENSMUST00000069960.12 S100a9-201

Description

S100 calcium binding protein A9 (calgranulin B) [Source:MGI Symbol;Acc:MGI:1338947]

Gene Synonyms

60B8Ag, BEE22, Cagb, GAGB, L1Ag, MRP14, p14

Location

Chromosome 3: 90,599,939-90,603,018 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 548 variant alleles and maps to 165 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000056071.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000117167.2	S100a9-202	519	113aa	ENSMUSP00000112843.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17543	P31725 Q3UP42	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000069960.12	S100a9-201	512	113aa	ENSMUSP00000070842.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17543	P31725 Q3UP42	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 512 bps, Translation length: 113 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P31725

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17543

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000069960.12

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000069960.12 S100a9-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000069960.12 S100a9-201

Summary

About Us

Get help

Our sister sites

Follow us