Transcript: ENSMUST00000067512.8 Smpd3-201

Description

sphingomyelin phosphodiesterase 3, neutral [Source:MGI Symbol;Acc:MGI:1927578]

Gene Synonyms

4631433G07Rik, fro, nSMase2, neutral sphingomyelinase II

Location

Chromosome 8: 106,979,180-107,064,620 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 3459 variant alleles and maps to 259 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000031906.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000067512.8	Smpd3-201	5148	655aa	ENSMUSP00000069255.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22634	Q9JJY3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000212896.2	Smpd3-202	2626	655aa	ENSMUSP00000148282.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22634	Q9JJY3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 5,148 bps, Translation length: 655 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JJY3

CCDS

This transcript is a member of the Mouse CCDS set: CCDS22634

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000067512.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000067512.8 Smpd3-201

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Transcript: ENSMUST00000067512.8 Smpd3-201

Summary

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