Transcript: ENSMUST00000067173.8 Tmem45a2-201

Description

transmembrane protein 45A2 [Source:MGI Symbol;Acc:MGI:1916707]

Gene Synonyms

2310005G13Rik

Location

Chromosome 16: 56,857,330-56,891,715 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 11 domains and features, is associated with 1848 variant alleles and maps to 150 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000046748.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000067173.8	Tmem45a2-201	3073	289aa	ENSMUSP00000070137.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49875	B7ZWJ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000227043.2	Tmem45a2-203	1447	289aa	ENSMUSP00000154589.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49875	B7ZWJ5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000226147.2	Tmem45a2-202	4610	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 3,073 bps, Translation length: 289 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49875

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000067173.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000067173.8 Tmem45a2-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000067173.8 Tmem45a2-201

Summary

About Us

Get help

Our sister sites

Follow us