Transcript: ENSMUST00000066987.14 Galnt10-201

Description

polypeptide N-acetylgalactosaminyltransferase 10 [Source:MGI Symbol;Acc:MGI:1890480]

Gene Synonyms

C330012K04Rik, GalNAc-T10, Galnt9

Location

Chromosome 11: 57,536,268-57,678,340 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 15 domains and features, is associated with 10456 variant alleles and maps to 266 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000020520.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000066987.14	Galnt10-201	4715	603aa	ENSMUSP00000065096.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24719	Q5SQF9 Q6P9S7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000108846.2	Galnt10-202	1745	134aa	ENSMUSP00000104474.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5ST18	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 4,715 bps, Translation length: 603 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6P9S7

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24719

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000066987.14

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000066987.14 Galnt10-201

Summary

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Transcript: ENSMUST00000066987.14 Galnt10-201

Summary

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