Transcript: ENSMUST00000063425.9 Vmn2r72-201

Description

vomeronasal 2, receptor 72 [Source:MGI Symbol;Acc:MGI:3647591]

Gene Synonyms

EG244114, Vmn2r72-ps

Location

Chromosome 7: 85,385,148-85,404,305 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 37 domains and features, is associated with 2674 variant alleles and maps to 86 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000051877.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000063425.9	Vmn2r72-201	4531	856aa	ENSMUSP00000133014.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52294	D3Z4N8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233415.2	Vmn2r72-202	4730	609aa	ENSMUSP00000156799.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W483	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000240708.1	Vmn2r72-204	4516	851aa	ENSMUSP00000159501.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V5L195	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000233546.2	Vmn2r72-203	4550	104aa	ENSMUSP00000156491.2	Nonsense mediated decay		A0A3B2W3M4	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 4,531 bps, Translation length: 856 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS52294

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000063425.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000063425.9 Vmn2r72-201

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Transcript: ENSMUST00000063425.9 Vmn2r72-201

Summary

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