Transcript: ENSMUST00000060128.7 Cldn23-201

Description

claudin 23 [Source:MGI Symbol;Acc:MGI:1919158]

Gene Synonyms

2310014B08Rik

Location

Chromosome 8: 36,291,866-36,293,713 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 17 domains and features, is associated with 723 variant alleles and maps to 145 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000055976.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000060128.7	Cldn23-201	1848	296aa	ENSMUSP00000049725.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22246	Q9D7D7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000210370.2	Cldn23-202	232	25aa	ENSMUSP00000147260.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1B0GQV1	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 1,848 bps, Translation length: 296 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D7D7

CCDS

This transcript is a member of the Mouse CCDS set: CCDS22246

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000060128.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000060128.7 Cldn23-201

Summary

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Transcript: ENSMUST00000060128.7 Cldn23-201

Summary

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