Transcript: ENSMUST00000058039.3 Vmn1r54-201

Description

vomeronasal 1 receptor 54 [Source:MGI Symbol;Acc:MGI:2148514]

Gene Synonyms

V1ra9, VN7

Location

Chromosome 6: 90,246,088-90,247,035 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 21 domains and features, is associated with 494 variant alleles and maps to 103 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000047203.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000226921.2	Vmn1r54-202	3234	315aa	ENSMUSP00000154354.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20356	Q9EPB8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000058039.3	Vmn1r54-201	948	315aa	ENSMUSP00000063052.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20356	Q9EPB8	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 948 bps, Translation length: 315 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9EPB8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS20356

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000058039.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000058039.3 Vmn1r54-201

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Transcript: ENSMUST00000058039.3 Vmn1r54-201

Summary

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