Transcript: ENSMUST00000045138.6 Gorab-201

Description

golgin, RAB6-interacting [Source:MGI Symbol;Acc:MGI:2138271]

Gene Synonyms

NTKL-BP1, Scyl1bp1

Location

Chromosome 1: 163,212,477-163,231,238 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 14 domains and features, is associated with 1343 variant alleles and maps to 156 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000040124.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000045138.6	Gorab-201	2538	368aa	ENSMUSP00000036253.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15429	Q8BRM2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000186402.2	Gorab-203	2663	161aa	ENSMUSP00000140320.2	Nonsense mediated decay		A0A087WQS3	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000185299.2	Gorab-202	724	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,538 bps, Translation length: 368 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BRM2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS15429

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000045138.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000045138.6 Gorab-201

Summary

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Transcript: ENSMUST00000045138.6 Gorab-201

Summary

About Us

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