Transcript: ENSMUST00000041860.13 Gdpd4-201

Description

glycerophosphodiester phosphodiesterase domain containing 4 [Source:MGI Symbol;Acc:MGI:3606573]

Location

Chromosome 7: 97,569,162-97,698,870 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 16 domains and features, is associated with 7471 variant alleles and maps to 184 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000035582.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000041860.13	Gdpd4-201	3053	632aa	ENSMUSP00000036772.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52318	Q3TT99	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000170049.2	Gdpd4-202	1899	632aa	ENSMUSP00000131960.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52318	Q3TT99	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 3,053 bps, Translation length: 632 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3TT99

CCDS

This transcript is a member of the Mouse CCDS set: CCDS52318

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000041860.13

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000041860.13 Gdpd4-201

Summary

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Transcript: ENSMUST00000041860.13 Gdpd4-201

Summary

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