Transcript: ENSMUST00000037029.7 Jcad-201

Description

junctional cadherin 5 associated [Source:MGI Symbol;Acc:MGI:2685174]

Gene Synonyms

9430020K01Rik

Location

Chromosome 18: 4,634,878-4,682,869 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 34 domains and features, is associated with 2328 variant alleles and maps to 180 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000033960.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000037029.7	Jcad-201	6782	1320aa	ENSMUSP00000038613.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37719	B7ZN02 Q5DTX6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000234153.2	Jcad-202	4575	1320aa	ENSMUSP00000157313.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37719	B7ZN02 Q5DTX6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000234494.2	Jcad-203	1007	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 6,782 bps, Translation length: 1,320 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5DTX6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37719

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000037029.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000037029.7 Jcad-201

Summary

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Transcript: ENSMUST00000037029.7 Jcad-201

Summary

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