Transcript: ENSMUST00000035804.9 Cdo1-201

Description

cysteine dioxygenase 1, cytosolic [Source:MGI Symbol;Acc:MGI:105925]

Gene Synonyms

1300002L19Rik, Cdo, D18Ucla3

Location

Chromosome 18: 46,846,260-46,861,462 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 1276 variant alleles and maps to 174 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000033022.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000035804.9	Cdo1-201	1595	200aa	ENSMUSP00000046517.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29234	P60334	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234819.2	Cdo1-205	1466	174aa	ENSMUSP00000157285.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L347	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000234179.2	Cdo1-203	427	143aa	ENSMUSP00000157139.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EGC3	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000234064.2	Cdo1-202	857	149aa	ENSMUSP00000157361.2	Nonsense mediated decay		A0A3Q4EH84	-
ENSMUST00000234222.2	Cdo1-204	611	96aa	ENSMUSP00000157344.2	Nonsense mediated decay		A0A3Q4L374	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,595 bps, Translation length: 200 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P60334

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29234

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000035804.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000035804.9 Cdo1-201

Summary

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Transcript: ENSMUST00000035804.9 Cdo1-201

Summary

About Us

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