Transcript: ENSMUST00000033161.7 Scnn1b-201

Description

sodium channel, nonvoltage-gated 1 beta [Source:MGI Symbol;Acc:MGI:104696]

Gene Synonyms

ENaC beta

Location

Chromosome 7: 121,464,261-121,517,735 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 23 domains and features, is associated with 3259 variant alleles and maps to 225 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000030873.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000033161.7	Scnn1b-201	2478	638aa	ENSMUSP00000033161.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21804	A2RS45 Q9WU38	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000206079.2	Scnn1b-203	437	142aa	ENSMUSP00000145678.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0U1RNR9	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000205520.2	Scnn1b-202	2591	502aa	ENSMUSP00000145900.2	Nonsense mediated decay		Q3TP51	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,478 bps, Translation length: 638 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9WU38

CCDS

This transcript is a member of the Mouse CCDS set: CCDS21804

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000033161.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000033161.7 Scnn1b-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000033161.7 Scnn1b-201

Summary

About Us

Get help

Our sister sites

Follow us