Transcript: ENSMUST00000029932.14 Clca3a1-201

Description

chloride channel accessory 3A1 [Source:MGI Symbol;Acc:MGI:1316732]

Gene Synonyms

Clca1

Location

Chromosome 3: 144,435,438-144,466,738 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 1 domain and feature, is associated with 2352 variant alleles and maps to 336 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000056025.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000059091.6	Clca3a1-202	3524	902aa	ENSMUSP00000054526.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17886	Q9QX15	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000029932.14	Clca3a1-201	3798	513aa	ENSMUSP00000029932.8	Nonsense mediated decay		Q91Z28	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 13, Coding exons: 9, Transcript length: 3,798 bps, Translation length: 513 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000029932.14

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000029932.14 Clca3a1-201

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Transcript: ENSMUST00000029932.14 Clca3a1-201

Summary

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