Transcript: ENSMUST00000028985.8 Bpifa1-201

Description

BPI fold containing family A, member 1 [Source:MGI Symbol;Acc:MGI:1338036]

Gene Synonyms

Plunc, SPLUNC1

Location

Chromosome 2: 153,984,800-153,991,139 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 17 domains and features, is associated with 793 variant alleles and maps to 180 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000027483.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000028985.8	Bpifa1-201	1106	278aa	ENSMUSP00000028985.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16925	P97361	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000144665.2	Bpifa1-203	765	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000140006.2	Bpifa1-202	559	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 1,106 bps, Translation length: 278 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P97361

CCDS

This transcript is a member of the Mouse CCDS set: CCDS16925

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000028985.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000028985.8 Bpifa1-201

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Transcript: ENSMUST00000028985.8 Bpifa1-201

Summary

About Us

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