Transcript: ENSMUST00000025482.10 Atp8b1-201

Description

ATPase, class I, type 8B, member 1 [Source:MGI Symbol;Acc:MGI:1859665]

Gene Synonyms

FIC1, Ic

Location

Chromosome 18: 64,662,038-64,794,338 reverse strand.

About this transcript

This transcript has 28 exons, is annotated with 39 domains and features, is associated with 7716 variant alleles and maps to 289 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039529.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025482.10	Atp8b1-201	6719	1251aa	ENSMUSP00000025482.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29304	Q148W0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235459.2	Atp8b1-202	737	245aa	ENSMUSP00000158349.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BB33	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000237686.2	Atp8b1-203	531	61aa	ENSMUSP00000157875.2	Nonsense mediated decay		A0A494B9Z8	-

Summary

Statistics

Exons: 28, Coding exons: 27, Transcript length: 6,719 bps, Translation length: 1,251 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q148W0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29304

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000025482.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000025482.10 Atp8b1-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000025482.10 Atp8b1-201

Summary

About Us

Get help

Our sister sites

Follow us