Transcript: ENSMUST00000024931.6 Ntn3-201

Description

netrin 3 [Source:MGI Symbol;Acc:MGI:1341188]

Gene Synonyms

Ntn2l, Ntn3

Location

Chromosome 17: 24,422,822-24,428,505 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 34 domains and features, is associated with 664 variant alleles and maps to 252 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000117406.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000024931.6	Ntn3-201	5038	580aa	ENSMUSP00000024931.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28478	Q52KG2 Q9R1A3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234420.2	Ntn3-202	4078	269aa	ENSMUSP00000157203.2	Nonsense mediated decay		A0A3Q4EI17	-
ENSMUST00000234909.2	Ntn3-204	704	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000234451.2	Ntn3-203	1751	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 5,038 bps, Translation length: 580 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9R1A3

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28478

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000024931.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000024931.6 Ntn3-201

Summary

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Transcript: ENSMUST00000024931.6 Ntn3-201

Summary

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