Transcript: ENSMUST00000023040.9 Slc25a17-201

Description

solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17 [Source:MGI Symbol;Acc:MGI:1342248]

Gene Synonyms

34kDa, PMP34

Location

Chromosome 15: 81,203,112-81,245,013 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 22 domains and features, is associated with 2621 variant alleles and maps to 227 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022404.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023040.9	Slc25a17-201	1724	307aa	ENSMUSP00000023040.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27666	O70579	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231140.2	Slc25a17-207	843	186aa	ENSMUSP00000155823.2	Nonsense mediated decay		A0A2R8VI88	-
ENSMUST00000230309.2	Slc25a17-204	384	52aa	ENSMUSP00000155849.2	Nonsense mediated decay		A0A2R8VI81	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000230983.2	Slc25a17-205	211	26aa	ENSMUSP00000154824.2	Nonsense mediated decay		A0A2R8VH23	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000229564.2	Slc25a17-202	384	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000229617.2	Slc25a17-203	869	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000231078.2	Slc25a17-206	629	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,724 bps, Translation length: 307 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O70579

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27666

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000023040.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000023040.9 Slc25a17-201

Summary

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Transcript: ENSMUST00000023040.9 Slc25a17-201

Summary

About Us

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