Transcript: ENSMUST00000022535.9 Dcp1a-201

Description

decapping mRNA 1A [Source:MGI Symbol;Acc:MGI:1923151]

Gene Synonyms

1110066A22Rik, 4930568L04Rik, D14Ertd817e, Mitc1, SMIF

Location

Chromosome 14: 30,201,569-30,249,020 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 15 domains and features, is associated with 2736 variant alleles and maps to 320 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021962.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022535.9	Dcp1a-201	5576	602aa	ENSMUSP00000022535.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36848	Q91YD3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000223658.2	Dcp1a-203	1257	419aa	ENSMUSP00000153370.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDC8	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000225196.2	Dcp1a-209	3194	602aa	ENSMUSP00000152897.2	Nonsense mediated decay	CCDS36848	Q91YD3	-
ENSMUST00000225286.2	Dcp1a-211	1317	177aa	ENSMUSP00000153074.2	Nonsense mediated decay		A0A286YCN4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000224692.2	Dcp1a-206	2117	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225124.2	Dcp1a-208	1985	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225243.2	Dcp1a-210	1980	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225923.2	Dcp1a-217	1965	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000224810.2	Dcp1a-207	1884	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000223754.2	Dcp1a-204	1841	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225806.2	Dcp1a-216	1836	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225521.2	Dcp1a-214	1759	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225655.2	Dcp1a-215	1481	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000223568.2	Dcp1a-202	1396	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000224453.2	Dcp1a-205	960	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225934.2	Dcp1a-218	755	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225407.2	Dcp1a-212	651	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225518.2	Dcp1a-213	2044	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 5,576 bps, Translation length: 602 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q91YD3

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36848

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000022535.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000022535.9 Dcp1a-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000022535.9 Dcp1a-201

Summary

About Us

Get help

Our sister sites

Follow us