Transcript: ENSMUST00000021596.9 Nrde2-201

Description

nrde-2 necessary for RNA interference, domain containing [Source:MGI Symbol;Acc:MGI:2670969]

Gene Synonyms

6720454P05Rik, BC002230

Location

Chromosome 12: 100,091,711-100,125,907 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 24 domains and features, is associated with 2145 variant alleles and maps to 212 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021179.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000021596.9	Nrde2-201	3718	1172aa	ENSMUSP00000021596.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS70414	Q80XC6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000221954.2	Nrde2-202	735	228aa	ENSMUSP00000152698.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1Y7VLX9	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000223314.2	Nrde2-203	684	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 3,718 bps, Translation length: 1,172 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q80XC6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS70414

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000021596.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000021596.9 Nrde2-201

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Transcript: ENSMUST00000021596.9 Nrde2-201

Summary

About Us

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