Mouse (GRCm39)
Description

serine hydroxymethyltransferase 1 (soluble) [Source:MGI Symbol;Acc:MGI:98299]

Gene Synonyms

Shmt, mshmt, mshmt1, mshmt2

Location
About this transcript

This transcript has 12 exons, is annotated with 15 domains and features, is associated with 1609 variant alleles and maps to 409 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000018744.15Shmt1-2012858478aaENSMUSP00000018744.9
 
Protein coding
CCDS24799P50431 Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENSMUST00000174214.2Shmt1-2101324441aaENSMUSP00000134269.2
 
Protein coding
G3UYY1 TSL:5CDS 5' incomplete
ENSMUST00000174719.8Shmt1-2111318439aaENSMUSP00000134318.2
 
Protein coding
G3UZ26 TSL:5CDS 5' incomplete
ENSMUST00000174174.8Shmt1-2091319122aaENSMUSP00000134703.2
 
Nonsense mediated decay
G3UZZ9 TSL:5CDS 5' incomplete
ENSMUST00000174093.8Shmt1-2081295No protein-
 
Protein coding CDS not defined
-TSL:5
ENSMUST00000172659.2Shmt1-204565No protein-
 
Protein coding CDS not defined
-TSL:2
ENSMUST00000173698.2Shmt1-207415No protein-
 
Protein coding CDS not defined
-TSL:5
ENSMUST00000173260.8Shmt1-2061283No protein-
 
Retained intron
-TSL:1
ENSMUST00000172804.8Shmt1-205582No protein-
 
Retained intron
-TSL:2
ENSMUST00000124227.2Shmt1-202569No protein-
 
Retained intron
-TSL:3
ENSMUST00000135081.2Shmt1-203453No protein-
 
Retained intron
-TSL:3
Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,858 bps, Translation length: 478 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P50431

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24799

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000018744.15

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.