Transcript: ENSMUST00000018521.11 Vezf1-201

Description

vascular endothelial zinc finger 1 [Source:MGI Symbol;Acc:MGI:1313291]

Gene Synonyms

db1

Location

Chromosome 11: 87,959,105-87,975,555 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 39 domains and features, is associated with 987 variant alleles and maps to 246 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000018377.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000018521.11	Vezf1-201	4583	518aa	ENSMUSP00000018521.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48880	Q5SXC4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000143052.2	Vezf1-202	3915	336aa	ENSMUSP00000114394.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SXC3	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 4,583 bps, Translation length: 518 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS48880

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000018521.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000018521.11 Vezf1-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000018521.11 Vezf1-201

Summary

About Us

Get help

Our sister sites

Follow us