Transcript: ENSMUST00000006451.8 Ttc5-201

Description

tetratricopeptide repeat domain 5 [Source:MGI Symbol;Acc:MGI:2683584]

Location

Chromosome 14: 51,002,872-51,022,976 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 15 domains and features, is associated with 1795 variant alleles and maps to 151 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000006288.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000006451.8	Ttc5-201	1842	440aa	ENSMUSP00000006451.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36905	Q99LG4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000226768.2	Ttc5-202	2366	185aa	ENSMUSP00000154412.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8BNN3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000228440.2	Ttc5-206	775	195aa	ENSMUSP00000154731.2	Nonsense mediated decay		A0A2I3BRU0	-
ENSMUST00000227751.2	Ttc5-204	497	75aa	ENSMUSP00000154085.2	Nonsense mediated decay		A0A2I3BQ86	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000227934.2	Ttc5-205	2058	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000227327.2	Ttc5-203	509	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,842 bps, Translation length: 440 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99LG4

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36905

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000006451.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000006451.8 Ttc5-201

Summary

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Transcript: ENSMUST00000006451.8 Ttc5-201

Summary

About Us

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