Transcript: ENSMUST00000005019.6 Crabp2-201

Description

cellular retinoic acid binding protein II [Source:MGI Symbol;Acc:MGI:88491]

Gene Synonyms

Crabp-2, CrabpII

Location

Chromosome 3: 87,855,973-87,860,683 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 681 variant alleles and maps to 181 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000004885.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000005019.6	Crabp2-201	931	138aa	ENSMUSP00000005019.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17460	P22935	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000163040.2	Crabp2-202	658	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 931 bps, Translation length: 138 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P22935

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17460

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000005019.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000005019.6 Crabp2-201

Summary

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Transcript: ENSMUST00000005019.6 Crabp2-201

Summary

About Us

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