Transcript: ENSMUST00000003575.11 Tpm4-201

Description

tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]

Gene Synonyms

2610528G24Rik

Location

Chromosome 8: 72,889,073-72,906,986 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 19 domains and features, is associated with 1383 variant alleles and maps to 271 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000031799.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000003575.11	Tpm4-201	2158	248aa	ENSMUSP00000003575.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22408	Q6IRU2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000238492.2	Tpm4-203	2044	158aa	ENSMUSP00000158818.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A571BEU1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000123177.3	Tpm4-202	1803	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000238752.2	Tpm4-204	2063	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,158 bps, Translation length: 248 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6IRU2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS22408

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000003575.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000003575.11 Tpm4-201

Summary

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Transcript: ENSMUST00000003575.11 Tpm4-201

Summary

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