Transcript: ENSMUST00000001130.8 Sebox-201

Description

SEBOX homeobox [Source:MGI Symbol;Acc:MGI:108012]

Gene Synonyms

OG9, Og9x

Location

Chromosome 11: 78,394,273-78,395,907 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 11 domains and features, is associated with 473 variant alleles and maps to 217 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000001103.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000001130.8	Sebox-201	1351	190aa	ENSMUSP00000001130.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25107	P70368	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000125670.3	Sebox-202	1300	56aa	ENSMUSP00000129606.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9Q4C2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,351 bps, Translation length: 190 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P70368

CCDS

This transcript is a member of the Mouse CCDS set: CCDS25107

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000001130.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000001130.8 Sebox-201

Summary

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Transcript: ENSMUST00000001130.8 Sebox-201

Summary

About Us

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