Summary
Sequence
Protein Information
Genetic Variation
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSMUST00000233417.2 Gm49909-202

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Description

predicted gene, 49909 [Source:MGI Symbol;Acc:MGI:6270609]

Location

Chromosome 17: 71,281,318-71,309,203 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 15 domains and features, is associated with 2479 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000117098.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000233357.2	Gm49909-201	837	172aa	ENSMUSP00000156883.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28954	Q3THE2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSMUST00000233417.2	Gm49909-202	636	172aa	ENSMUSP00000156594.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZWQ9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Protein summary

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Protein domains for ENSMUSP00000156594.2

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