Summary
Sequence
Protein Information
Genetic Variation
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSMUST00000047793.6 Hoxd1-201

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Description

homeobox D1 [Source:MGI Symbol;Acc:MGI:96201]

Gene Synonyms

Hox-4.9

Location

Chromosome 2: 74,593,324-74,595,486 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 16 domains and features, is associated with 557 variant alleles and maps to 228 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000042448.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000047793.6	Hoxd1-201	1862	328aa	ENSMUSP00000043078.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16147	Q01822	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

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Protein summary

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Protein domains for ENSMUSP00000043078.4

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