Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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- Orthologues
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Gene: 1110002E22Rik ENSMUSG00000090066

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Description

RIKEN cDNA 1110002E22 gene [Source:MGI Symbol;Acc:MGI:1915066]

Location

Chromosome 3: 137,770,813-137,787,267 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 2 transcripts (splice variants) and 190 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000163080.3	1110002E22Rik-201	9741	1786aa	ENSMUSP00000123851.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E0CYV9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000184925.2	1110002E22Rik-202	465	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Summary

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